DeepVariant Datasets

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    DeepVariant Datasets

    Sample data used for testing and benchmarking the DeepVariant variant caller.

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gs://deepvariant • 17K files, 6.27 TB
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HG002.novaseq.pcr-free.35x.dedup.grch38_no_alt.bam 5,642
HG003.novaseq.pcr-free.35x.dedup.grch38_no_alt.bam 3,699
HG001.novaseq.pcr-free.30x.R1.fastq.gz 1,824
HG003.pfda_challenge.grch38.phased.bam 825
HG002.novaseq.pcr-free.35x.dedup.grch38_no_alt.chr20.bam 738
HG002.novaseq.pcr-free.35x.vg-1.55.0.bam 728
HG001-NA12878-pFDA.merged.sorted.bam 636
HG003.pfda_challenge.grch38.phased.bam.bai 498
HG001.novaseq.pcr-free.30x.vg-1.55.0.bam 442
HG002.pfda_challenge.grch38.phased.bam 439
Largest files
File Size
HG003_R104_sup_merged.80x.bam 257 GB
HG003_R1041_Guppy6_sup_2_GRCh38.pass.bam 178 GB
HG002_R104_sup_merged.50x.bam 178 GB
FFG_IL_T_6h.bwa.dedup.bam 177 GB
HG004_R104_sup_merged.40x.bam 136 GB
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