GATK Test Data

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    GATK Test Data

    Test datasets for the GATK variant caller, with data from WGS, WES, and RNA-seq.

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s3://gatk-test-data • 656 files, 1.05 TB
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CRAM
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NA12878_24RG_med.hg38.bam 476
NA12878.bam 265
NA12878_24RG_small.hg38.bam 220
NA12878_24RG_small.hg38.bai 210
NA12878_24RG_med.hg38.bai 208
HG00133.alt_bwamem_GRCh38DH.20150826.GBR.exome.bam 172
NA12878.bam 169
NA12878.bai 120
H06HDADXX130110.1.ATCACGAT.20k_reads_1.fastq 113
NA12878_20k.b37.bam 112
Largest files
File Size
SM-74NEG.bam 42.2 GB
D0UW5.8.unmapped.bam 41.1 GB
D0UW5.4.unmapped.bam 41 GB
HG01697.alt_bwamem_GRCh38DH.20150826.IBS.exome.cram 40.7 GB
C09DF.1.unmapped.bam 39 GB
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