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GATK Test Data
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GATK Test Data
Test datasets for the GATK variant caller, with data from WGS, WES, and RNA-seq.
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Browse this bucket on the command-line
aws s3 ls s3://gatk-test-data/ --no-sign-request
s3://gatk-test-data
• 656 files, 1.05 TB
BAM
CRAM
VCF
Other
Most-viewed files on 42basepairs
File
Views
NA12878_24RG_med.hg38.bam
476
NA12878.bam
265
NA12878_24RG_small.hg38.bam
220
NA12878_24RG_small.hg38.bai
210
NA12878_24RG_med.hg38.bai
208
HG00133.alt_bwamem_GRCh38DH.20150826.GBR.exome.bam
172
NA12878.bam
169
NA12878.bai
120
H06HDADXX130110.1.ATCACGAT.20k_reads_1.fastq
113
NA12878_20k.b37.bam
112
Largest files
File
Size
SM-74NEG.bam
42.2 GB
D0UW5.8.unmapped.bam
41.1 GB
D0UW5.4.unmapped.bam
41 GB
HG01697.alt_bwamem_GRCh38DH.20150826.IBS.exome.cram
40.7 GB
C09DF.1.unmapped.bam
39 GB
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